At 500,000 years, the dating of this skull of Homo heidelbergensis clashed with previous DNA dates for
Neanderthal origins.
J.
TRUEBA/MSF/SPL
The
story of human ancestors used to be writ only in bones and tools, but since the
1960s DNA has given its own version of events. Some results were revelatory,
such as when DNA studies showed that all modern humans descended from ancestors
who lived in Africa more than 100,000 years ago. Others were baffling,
suggesting that key events in human evolution happened at times that flatly
contradicted the archaeology.
Now
archaeologists and geneticists are beginning to tell the same story, thanks to
improved estimates of DNA’s mutation rate — the molecular clock that
underpins genetic dating1–4. “It’s incredibly
vindicating to finally have some reconciliation between genetics and
archaeology,” says Jeff Rose, an archaeologist at the University of Birmingham,
UK. Archaeologists and geneticists may now be able to tackle nuanced questions
about human history with greater confidence in one another’s data. “They do
have to agree,” says Aylwyn Scally, an evolutionary genomicist at the Wellcome
Trust Sanger Institute in Hinxton, UK. “There was a real story.”
The
concept of a DNA clock is simple: the number of DNA letter differences between
the sequences of two species indicates how much time has elapsed since their
last common ancestor was alive. But for estimates to be correct, geneticists
need one crucial piece of information: the pace at which DNA letters change.
Geneticists
have previously estimated mutation rates by comparing the human genome with the
sequences of other primates. On the basis of species-divergence dates gleaned —
ironically — from fossil evidence, they concluded that in human DNA, each
letter mutates once every billion years. “It’s a suspiciously round number,”
says Linda Vigilant, a molecular anthropologist at the Max Planck Institute for
Evolutionary Anthropology in Leipzig, Germany. The suspicion turned out to be
justified.
In
the past few years, geneticists have been able to watch the molecular clock in
action, by sequencing whole genomes from dozens of families5 and comparing mutations in parents and children. These studies show
that the clock ticks at perhaps half the rate of previous estimates, says
Scally.
In
a review published on 11 September1,Scally and his colleague
Richard Durbin used the slower rates to reevaluate the timing of key splits in
human evolution. “If the mutation rate is halved, then all the dates you
estimate double,” says Scally. “That seems like quite a radical change.” Yet
the latest molecular dates mesh much better with key archaeological dates.
Take
the 400,000–600,000-year-old Sima de Los Huesos site in Atapuerca, Spain, which
yielded bones attributed to Homo
heidelbergensis, the direct ancestors of Neanderthals. Genetic studies have
suggested that earlier ancestors of Neanderthals split from the branch leading
to modern humans much more recently, just 270,000–435,000 years ago. A slowed
molecular clock pushes this back to a more comfortable 600,000 years ago
(see ‘Better agreement over the human story’).
SOURCE: REF. 1
A
slower molecular clock could also force scientists to re-think the timing of
later turning points in prehistory, including the migration of modern humans
out of Africa. Genetic studies of humans around the world have suggested that
the ancestors of Europeans and Asians left Africa about 60,000 years ago.
That date caused many to conclude that 100,000-year-old human fossils
discovered in Israel represented a dead-end migration rather than the beginning
of a global exodus, says Scally. Scally’s calculations put “out of Africa”
closer to 120,000 years ago, suggesting that the Israeli sites represent a
launching pad for the spread of humans into Asia and Europe.
The
latest genetic dates also fit with several sites in the Middle East that
contain tools apparently made by modern humans but dating to around 100,000
years ago. At that time, sea levels between Africa and the Arabian Peninsula
were lower than they are now, and a wetter climate would have made the
peninsula lush and habitable, perhaps beckoning modern humans out of Africa.
Rose, who works one such site, in Oman, says that he “has been over the moon”
since reading Scally and Durbin’s paper.
The
revised molecular clock may also help to settle a debate over whether humans
ventured further into Asia more than 60,000 years ago, says Michael Petraglia,
an archaeologist at the University of Oxford, UK, who favours an early date.
Although
a slowed molecular clock may harmonize the story of human evolution, it does
strange things when applied further back in time, says David Reich, an
evolutionary geneticist at Harvard Medical School in Boston, Massachusetts.
“You can’t have it both ways.”
For
instance, the slowest proposed mutation rate puts the common ancestor of humans
and orang-utans at 40 million years ago, he says: more than 20 million years
before dates derived from abundant fossil evidence. This very slow clock has
the common ancestor of monkeys and humans co-existing with the last dinosaurs.
“It gets very complicated,” deadpans Reich.
Some
researchers, including Scally, have proposed that the mutation rate may have
slowed over the past 15 million years, thereby accounting for such
discrepancies. Fossil evidence suggests that ancestral apes were smaller than
living ones, and small animals tend to reproduce more quickly, speeding the
mutation rate.
Little
concrete evidence supports this idea, says Reich. He agrees that the molecular
clock must be slower than was thought, but says that the question is how slow.
“My strong view right now is that the true value of the human mutation rate is
an open question.”